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Isolation and characterization of 8 microsatellite loci for the ‘‘killer shrimp’’, an invasive Ponto-Caspian amphipod Dikerogammarus villosus (Crustacea: Amphipoda)

dc.contributor.authorRewicz, Tomasz
dc.contributor.authorWattier, Rémi A.
dc.contributor.authorRigaud, Thierry
dc.contributor.authorBacela-Spychalska, Karolina
dc.contributor.authorGrabowski, Michal
dc.date.accessioned2015-03-31T12:33:59Z
dc.date.available2015-03-31T12:33:59Z
dc.date.issued2015
dc.identifier.issn1573-4978
dc.identifier.urihttp://hdl.handle.net/11089/7580
dc.description.abstractDikerogammarus villosus is a freshwater amphipod of the Ponto-Caspian origin recognized as one of the 100 worst alien species in Europe, having negative impact on biodiversity and functioning of the invaded aquatic ecosystems. The species has a wide ecophysiological tolerance and during the last 20 years it has rapidly spread throughout European inland waters. In consequence, it presents a major conservation management problem. We describe eight polymorphic microsatellite loci developed for D. villosus by combining a biotin-enrichment protocol and new generation 454GS-FLX Titanium pyrosequencing technology. When genotyped in 64 individuals from two locations, the loci exhibited a mean diversity of 4.87 alleles per locus (2–13). The mean observed and expected heterozygosities were, respectively, 0.439 (0.091–0.844) and 0.468 (0.089–0.843). Gametic disequilibrium was not detected for any pair of loci. The microsatellite markers will be a valuable tool in assessing the demographic processes associated with invasion of the killer shrimp from a genetic point of view.pl_PL
dc.language.isoenpl_PL
dc.publisherSpringer Science+Business Media B.V.pl_PL
dc.relation.ispartofseriesMolecular Biology Reports;January 2015, Volume 42, Issue 1
dc.rightsUznanie autorstwa 3.0 Polska*
dc.rights.urihttp://creativecommons.org/licenses/by/3.0/pl/*
dc.subjectInvasive speciespl_PL
dc.subjectPopulation geneticspl_PL
dc.subjectDikerogammarus villosuspl_PL
dc.subjectBiological invasionspl_PL
dc.subjectPolymorphic locipl_PL
dc.titleIsolation and characterization of 8 microsatellite loci for the ‘‘killer shrimp’’, an invasive Ponto-Caspian amphipod Dikerogammarus villosus (Crustacea: Amphipoda)pl_PL
dc.typeArticlepl_PL
dc.page.number13-17pl_PL
dc.contributor.authorAffiliationTomasz Rewicz - Department of Invertebrate Zoology and Hydrobiology, University of Lodzpl_PL
dc.contributor.authorAffiliationRémi A.Wattier - Equipe Ecologie Evolutive, Universite´ de Bourgognepl_PL
dc.contributor.authorAffiliationThierry Rigaud - Equipe Ecologie Evolutive, Universite´ de Bourgognepl_PL
dc.contributor.authorAffiliationKarolina Bacela-Spychalska - Department of Invertebrate Zoology and Hydrobiology, University of Lodzpl_PL
dc.contributor.authorAffiliationMichał Grabowski - Department of Invertebrate Zoology and Hydrobiology, University of Lodzpl_PL
dc.referencesDAISIE (2009) Handbook of alien species in Europe. Springer, Dordrecht. ISBN 978-1-4020-8279-5pl_PL
dc.referencesBij de Vaate A, Jazdzewski K, Ketelaars HAM, Gollasch S, Van der Velde G (2002) Geographical patterns in range extension of Ponto-Caspian macroinvertebrate species in Europe. Can J Fish Aquat Sci 59:1159–1174pl_PL
dc.referencesBollache L, Devin S, Wattier R, Chovet M, Beisel JN, Moreteau JC, Rigaud T (2004) Rapid range extension of the Ponto-Caspian amphipod Dikerogammarus villosus in France: potential consequences. Arch Hydrobiol 160:57–66pl_PL
dc.referencesBa˛cela K, Grabowski M, Konopacka A (2008) Dikerogammarus villosus (Sowinsky, 1894) (Crustacea, Amphipoda) enters Vistula— the biggest river in the Baltic basin. Aquat Invasions 3:95–98pl_PL
dc.referencesPiscart C, Bergerot B, Laffaille P, Marmonier P (2010) Are amphipod invaders a threat to regional biodiversity? Biol Invasions 12:853–863pl_PL
dc.referencesvan Riel MC, Velde GVD, Rajagopal S, Marguillier S, Dehairs F, De Vaate AB (2006) Trophic relationships in the Rhine food web during invasion and after establishment of the Ponto- Caspian invader Dikerogammarus villosus. Hydrobiologia 565:39–58pl_PL
dc.referencesMacNeil C, Platvoet D (2005) The predatory impact of the freshwater invader Dikerogammarus villosus on native Gammarus pulex (Crustacea: Amphipoda); influences of differential microdistribution and food resources. J Zool 267:31–38pl_PL
dc.referencesDick JTA, Platvoet D, Kelly DW (2002) Predatory impact of the freshwater invader Dikerogammarus villosus (Crustacea: Amphipoda). Can J Fish Aquat Sci 59:1078–1084pl_PL
dc.referencesBruijs MCM, Kelleher B, Van der Velde G, Bij de Vaate AB (2001) Oxygen consumption, temperature and salinity tolerance of the invasive amphipod Dikerogammarus villosus: indicators of further dispersal via ballast water transport. Arch Hydrobiol 152:633–646pl_PL
dc.referencesWijnhoven S, Van Riel MC, Van Der Velde G (2003) Exotic and indigenous freshwater gammarid species: physiological tolerance to water temperature in relation to ionic content of the water. Aquat Ecol 37:151–158pl_PL
dc.referencesBrooks SJ, Platvoet D, Mills CL (2008) Cation regulation and alteration of water permeability in the amphipod Dikerogammarus villosus: an indicator of invasion potential. Fundam Appl Limnol 172:183–189pl_PL
dc.referencesPiscart C, Kefford BJ, Beisel JN (2011) Are salinity tolerances of non-native macroinvertebrates in France an indicator of potential for their translocation in a new area? Limnologica 41:107–112pl_PL
dc.referencesPo¨ckl M (2007) Strategies of a successful new invader in European fresh waters: fecundity and reproductive potential of the Ponto-Caspian amphipod Dikerogammarus villosus in the Austrian Danube, compared with the indigenous Gammarus fossarum and G. roeseli. Freshw Biol 52:50–63pl_PL
dc.referencesPo¨ckl M (2009) Success of the invasive Ponto-Caspian amphipod Dikerogammarus villosus by life history traits and reproductive capacity. Biol Invasions 11:2021–2041pl_PL
dc.referencesGrabowski M, Bacela K, Konopacka A (2007) How to be an invasive gammarid (Amphipoda: Gammaroidea)–Comparison of life history traits. Hydrobiologia 590:75–84pl_PL
dc.referencesBacela-Spychalska K, Grabowski M, Rewicz T, Konopacka A, Wattier R (2013) The ‘‘killer shrimp’’ Dikerogammarus villosus (Crustacea, Amphipoda) invading Alpine Lakes: overland transport by recreational boats and scuba-diving gear as potential entry vectors? Aquat Conserv: Mar Freshw Ecosyst 24:606–618pl_PL
dc.referencesMacNeil C, Platvoet D, Dick JTA, Fielding N, Constable A, Hall N, Aldridge D, Renals T, Diamond M (2010) The Ponto-Caspian ‘killer shrimp’, Dikerogammarus villosus (Sowinsky, 1894), invades the British Isles. Aquat Invasions 5:441–445pl_PL
dc.referencesWattier RA, Beguet J, Gaillard M, Mu¨ller JC, Bollache L, Perrot- Minnot M-J (2006) Molecular markers for systematic identification and population genetics of the invasive Ponto-Caspian freshwater gammarid Dikerogammarus villosus (Crustacea, Amphipoda). Mol Ecol Notes 6:487–489pl_PL
dc.referencesWattier RA, Haine ER, Beguet J, Martin G, Bollache L, Musko´ IB, Platvoet D, Rigaud T (2007) No genetic bottleneck or associated microparasite loss in invasive populations of a freshwater amphipod. Oikos 116:1941–1953pl_PL
dc.referencesKijas JMH, Fowler JCS, Garbett CA, Thomas MR (1994) Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin coated magnetic particles. Biotechniques 16:657–660pl_PL
dc.referencesMalausa T, Gilles A, Megle´cz E et al (2011) High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries. Mol Ecol Resour 11:683-644pl_PL
dc.referencesMegle´cz E, Costedoat C, Dubut V, Gilles A, Malausa T, Pech N, Martin JF (2010) QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects. Bioinformatics 26:403–404pl_PL
dc.referencesGoudet J (1995) FSTAT (version 1.2): a computer program to calculate F-statistics. J Hered 86:485–486pl_PL
dc.referencesWattier R, Engel CR, Saumitou-Laprade P, Valero M (1998) Short allele dominance as a source of heterozygote deficiency at microsatellite loci: experimental evidence at the dinucleotide locus Gv1CT in Gracilaria gracilis (Rhodophyta). Mol Ecol 7:1569–1573pl_PL
dc.referencesvan Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538pl_PL
dc.referencesGrabowski M, Ja_zd_zewski K, Konopacka A (2005) Alien crustacea in polish waters (Part I) introduction and decapoda. Oceanol Hydrobiol Stud 24:43–62pl_PL
dc.referencesHuang W, Liang X, Qu C, Cao J, Zhao C, Cao L (2013) Development and characterization of novel polymorphic microsatellite loci in Siniperca scherzeri Steindachner and Siniperca chuatsi (Basilewsky). Mol Biol Rep 40:751–756pl_PL
dc.referencesLabat F, Piscart C, Fontan B (2011) First records, pathways and distributions of four new Ponto-Caspian amphipods in France. Limnologica 41:290–295pl_PL
dc.referencesGallardo B, Aldridge DC (2013) Priority setting for invasive species management: risk assessment of Ponto-Caspian invasive species into Great Britain. Ecol Appl 23:352–364 Mol Biol Rep (2015) 42:13–17 17 123pl_PL
dc.identifier.doi10.1007/s11033-014-3742-0


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