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Simple approach to bacterial genomes comparison based on Average Nucleotide Identity (ANI) using fastANI and ANIclustermap

dc.contributor.authorMusiał, Klaudia
dc.contributor.authorPetruńko, Leon
dc.contributor.authorGmiter, Dawid
dc.date.accessioned2024-09-24T10:27:58Z
dc.date.available2024-09-24T10:27:58Z
dc.date.issued2024-09-18
dc.identifier.issn1730-2366
dc.identifier.urihttp://hdl.handle.net/11089/53225
dc.description.abstractThe Average Nucleotide Identity (ANI) was proposed as a standard for taxonomic affiliation of newly sequenced bacterial genomes. However, usage of ANI value as a means of strains phenotypic diversity offers a relatively easy way for studding bacterial phylogeny. Here we present a simple approach to bacterial genomes comparison based on ANI using fastANI and ANIclustermap. Both programs are available as an open-source tools and can be run using simple command lines. We present protocol for programs installation as a conda packages, that facilitate it utilization. Further, we explain how to prepare commands to perform the analysis. We believed our work could be useful for young scientist that begin their experience with bioinformatics.en
dc.language.isoen
dc.publisherWydawnictwo Uniwersytetu Łódzkiegopl
dc.relation.ispartofseriesActa Universitatis Lodziensis. Folia Biologica et Oecologicaen
dc.rights.urihttps://creativecommons.org/licenses/by-nc-nd/4.0
dc.subjectbacterial genomes comparisonen
dc.subjectbacterial phylogenyen
dc.subjectAverage Nucleotide Identity (ANI)en
dc.subjectfastANIen
dc.subjectANIclustermapen
dc.titleSimple approach to bacterial genomes comparison based on Average Nucleotide Identity (ANI) using fastANI and ANIclustermapen
dc.typeArticle
dc.page.number66-71
dc.contributor.authorAffiliationMusiał, Klaudia - Jan Kochanowski University of Kielce, Faculty of Natural Sciences, Institute of Biology, Department of Microbiology, Polanden
dc.contributor.authorAffiliationPetruńko, Leon - Jan Kochanowski University of Kielce, Faculty of Natural Sciences, Institute of Biology, Department of Microbiology, Polanden
dc.contributor.authorAffiliationGmiter, Dawid - Jan Kochanowski University of Kielce, Faculty of Natural Sciences, Institute of Biology, Department of Microbiology, Polanden
dc.identifier.eissn2083-8484
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dc.contributor.authorEmailMusiał, Klaudia - musial.klaudia0805@gmail.com
dc.contributor.authorEmailPetruńko, Leon - leonpetrunko@gmail.com
dc.contributor.authorEmailGmiter, Dawid - dawid.gmiter@ujk.edu.pl
dc.identifier.doi10.18778/1730-2366.18.10
dc.relation.volume18


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